Publications

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MAnuscripts

Emilio D. Poggio, Robyn L. McClelland, Kristina N. Blank, Spencer Hansen, Shweta Bansal, Andrew S. Bomback, Pietro A. Canetta, Pascale Khairallah, Krzysztof Kiryluk, Stewart H. Lecker, Gearoid M. McMahon, Paul M. Palevsky, Samir Parikh, Sylvia E. Rosas, Katherine Tuttle, Miguel A. Vazquez, Anitha Vijayan, Brad H. Rovin and for the Kidney Precision Medicine Project
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Systematic Review and Meta-Analysis of Native Kidney Biopsy Complications
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CJASN
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October 2020, CJN.04710420
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DOI: https://doi.org/10.2215/CJN.04710420
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Jessica K. Lukowski, Annapurna Pamreddy, Dusan Velickovic, Guanshi Zhang, Ljiljana Pasa-Tolic, Theodore Alexandrov, Kumar Sharma, Christopher R. Anderton*, and the Kidney Precision Medicine Project
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Storage Conditions of Human Kidney Tissue Sections Affect Spatial Lipidomics Analysis Reproducibility
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J. Am. Soc. Mass Spectrom
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September 8, 2020
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DOI: https://doi.org/10.1021/jasms.0c00256
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Tara K. Sigdel, Paul D. Piehowski, Sudeshna Roy, Juliane Liberto, Joshua R. Hansen, Adam C. Swensen, Rui Zhao, Ying Zhu, Priyanka Rashmi, Andrew Schroeder, Izabella Damm, Swastika Sur, Jinghui Luo, Yingbao Yang, Wei-Jun Qian, Minnie M. Sarwal and the Kidney Precision Medicine Project (KPMP)
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Near-Single-Cell Proteomics Profiling of the Proximal Tubular and Glomerulus of the Normal Human Kidney
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Frontiers in Medicine
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17 Sept 2020
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DOI: https://doi.org/10.3389/fmed.2020.00499
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Rajasree Menon, PhD, Edgar A. Otto, PhD, Rachel Sealfon, PhD, Viji Nair, MS, Aaron K. Wong, PhD, Chandra L. Theesfeld, PhD, Xi Chen, PhD, Yuan Wang, MA, Avinash S. Boppana, Jinghui Luo, PhD, Yingbao Yang, MD, PhD, Peter M. Kasson, MD, PhD, Jennifer A. Schaub, MD, Celine C. Berthier, PhD, Sean Eddy, PhD, Chrysta C. Lienczewski, BS, Bradley Godfrey, PhD, Susan L. Dagenais, PhD, Ryann Sohaney, DO, John Hartman, BS, Damian Fermin, PhD, Lalita Subramanian, PhD, MPH, Helen C. Looker, MBBS, Jennifer L. Harder, MD, Laura H. Mariani, MD, MS, Jeffrey B. Hodgin, MD, PhD, Jonathan Z. Sexton, PhD, Christiane E. Wobus, PhD, Abhijit S. Naik, MD, MPH, Robert G. Nelson, MD, PhD, Olga G. Troyanskaya, PhD, Matthias Kretzler, MD
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SARS-CoV-2 receptor networks in diabetic and COVID-19 associated kidney disease
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Kidney International
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2020 Oct 07
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DOI: https://doi.org/10.1016/j.kint.2020.09.015
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Ong E, Wang LL, Schaub J, O’Toole J, Steck B, Rosenberg AZ, Dowd F, Hansen J, Barisoni L, Jain S, de Boer IH, Valerius MT, Waikar SS, Park C, Crawford DC, Alexandrov T, Anderton CR, Stoeckert C, Weng C, Diehl AD, Mungall CJ, Haendel M, Robinson PB, Himmelfarb J, Iyengar R, Kretzler M, Mooney S, He Y, and the Kidney Precision Medicine Project
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Modelling kidney disease using ontology: insights from the Kidney Precision Medicine Project
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Nature Reviews Nephrology
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16 September 2020
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DOI: 10.1038/s41581-020-00335-w
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Keith D. Brown, Catherine Campbell & Glenda V. Roberts
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Precision medicine in kidney disease: the patient’s view
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Nat Rev Nephr
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2020 Aug 08
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DOI: 10.1038/s41581-020-0319-0
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Rajasree Menon, Edgar A. Otto, Paul Hoover, Sean Eddy, Laura Mariani, Bradley Godfrey, Celine C. Berthier, Felix Eichinger, Lalita Subramanian, Jennifer Harder, Wenjun Ju, Viji Nair, Maria Larkina, Abhijit S. Naik, Jinghui Luo, Sanjay Jain, Rachel Sealfon, Olga Troyanskaya, Nir Hacohen, Jeffrey B. Hodgin, Matthias Kretzler, Kidney Precision Medicine Project (KPMP), and Nephrotic Syndrome Study Network (NEPTUNE)
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Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker
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JCI Insight
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2020 Mar 26;5(6):e133267
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DOI: 10.1172/jci.insight.133267
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Dušan Veličković, Guanshi Zhang, Dejan Bezbradica, Arunima Bhattacharjee, Ljiljana Paša-Tolić, Kumar Sharma, Theodore Alexandrov, Christopher R. Anderton*, and KPMP Consortium
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Response Surface Methodology as a New Approach for Finding Optimal MALDI Matrix Spraying Parameters for Mass Spectrometry Imaging
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J Am Soc Mass Spec
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2020 Feb 06;31(3):508-516
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DOI: 10.1021/jasms.9b00074
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PMID: 32126772
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Blue B. Lake, Song Chen, Masato Hoshi, Nongluk Plongthongkum, Diane Salamon, Amanda Knoten, Anitha Vijayan, Ramakrishna Venkatesh, Eric H. Kim, Derek Gao, Joseph Gaut, Kun Zhang & Sanjay Jain
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A single-nucleus RNA-sequencing pipeline to decipher the molecular anatomy and pathophysiology of human kidneys
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Nat Commun
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2019 Jun 27;10(1):2832
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DOI: 10.1038/s41467-019-10861-2
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PMID: 31249312
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PMCID: PMC6597610
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Beatriz Desanti De Oliveira, Katherine Xu, Tian H. Shen, Miriam Callahan, Krzysztof Kiryluk, Vivette D. D’Agati, Nicholas P. Tatonetti, Jonathan Barasch & Prasad Devarajan
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Molecular Nephrology: Types of Acute Tubular Injury
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Nat Rev Nephrol
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2019 Oct;15(10):599-612
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DOI: 10.1038/s41581-019-0184-x
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PMID: 31439924
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Paul L. Kimmel, Nichole Jefferson, Jenna M. Norton and Robert A. Star
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How Community Engagement is Enhancing NIDDK Research
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Clin J Am Soc Nephrol
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2019 May 7;14(5):768-770
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DOI: 10.2215/CJN.14591218
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PMID: 30917992
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PMCID: PMC6500937
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Brad P. Dieter, Radica Z. Alicic, and Katherine R. Tuttle
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GLP-1 Receptor Agonists in Diabetic kidney Disease: From the Patient-Side to the Bench-Side
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Am J Physiol Renal Physiol
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2018 Dec 1;315(6):F1519-F1525
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DOI: 10.1152/ajprenal.00211.2018
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Krzysztof Kiryluk, Andrew Bomback, Yim-Ling Cheng, Pablo G. Camara, Raul Rabadan, Peter Sims, and Jonathan Barasch
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Precision Medicine for Acute Kidney Injury (AKI): Redefining AKI by Agnostic Kidney Tissue Interrogation and Genetics
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Semin Nephrol
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2018 Jan;38(1):40-51
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DOI: 10.1016/j.semnephrol.2017.09.006
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PMID: 29291761
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PMCID: PMC5753434
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Jens Hansen, Rachel Sealfon, Rajasree Menon, Michael T. Eadon, Blue B. Lake, Becky Steck, Dejan Dobi, Samir Parikh, Tara K. Sidgel, Theodore Alexandrov, Andrew Schroeder, Edgar A. Otto, Christopher R. Anderton, Daria Barwinska, Guanshi Zheng, Michael P. Rose, John P. Shapiro, Dusan Velickovic, Annapurna Pamreddy, Seth Winfree, Yongqun He, Ian H. de Boer, Jeffrey B. Hodgin, Abhijit Nair, Kumar Sharma, Minnie Sarwal, Kun Zhang, Jonathan Himmelfarb, Zoltan Laszik, Brad Rovin, Pierre C. Dagher, John Cijiang He, Tarek M. El-Achkar, Sanjay Jain, Olga G. Troyanskaya, Matthias Kretzler, Ravi Iyengar, Evren U. Azeloglu, for the Kidney Precision Medicine Project Consortium
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Towards Building a Smart Kidney Atlas: Network-based integration of multimodal transcriptomic, proteomic, metabolomic and imaging data in the Kidney Precision Medicine Project
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Biorxiv [Preprint]
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2020 July 24
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DOI: 10.1101/2020.07.23.216507
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Supplemental materials:
Text Link
Andrew W. Schroeder, Swastika Sur, Priyanka Rashmi, Izabella Damm, Arya Zarinsefat, Matthias Kretzler, Jeff Hodgin, George Hartoularos, Tara Sigdel, Jimmie Chun Ye, Minnie M. Sarwal, for the Kidney Precision Medicine Project
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Novel Human Kidney Cell Subsets Identified by Mux-Seq
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BioRxiv 973925 [Preprint]
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2020 Mar 04
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DOI: 10.1101/2020.03.02.973925
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Supplemental materials:
Text Link
Tarek M. El-Achkar, Michael T. Eadon, Rajasree Menon, Blue B. Lake, Tara K. Sigdel, Theodore Alexandrov, Samir Parikh, Guanshi Zhang, Dejan Dobi, Kenneth W. Dunn, Edgar A. Otto, Christopher R. Anderton, Jonas M. Carson, Jinghui Luo, Chris Park, Habib Hamidi, Jian Zhou, Paul Hoover, Andrew Schroeder, Marianinha Joanes, Evren Azeloglu, Rachel Sealfon, Seth Winfree, Becky Steck, Yongqun He, Vivette D’Agati, Ravi Iyengar, Olga G Troyanskaya, Laura Barisoni, Joseph Gaut, Kun Zhang, Zoltan Laszik, Brad Rovin, Pierre C. Dagher, Kumar Sharma, Minnie Sarwal, Jeffrey B. Hodgin, Charles E. Alpers, Matthias Kretzler, Sanjay Jain, For the Kidney Precision Medicine Project
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A Multimodal and Integrated Approach to Interrogate Human Kidney Biopsies with Rigor and Reproducibility: The Kidney Precision Medicine Project
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BioRxiv 828665 [Preprint]
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2019 Nov 06
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DOI: 10.1101/828665
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Supplemental materials:
Text Link
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Publications &
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Used by KPMP investigators to facilitate the development
and publication of research using KPMP data.
How to submit a KPMP P&P manuscript.

Frequently asked Questions

Content proposals

When do I have to submit a concept proposal?

A concept proposal should be submitted when a discrete concept for a manuscript has been put together and the base approach has been defined. You should submit the concept proposal two weeks (by 12:00p ET) before the P&P call you would like to be reviewed on. The P&P meets bi-weekly.

What do I include in a concept proposal submission?

The proposal will include a title, proposed writing group (author list), hypotheses or aims, description of data to be used, and confirmation that any used KPMP data is/will be publicly available in accordance with the KPMP Data Sharing Plan.

Do I have to wait for P&P approval of the concept proposal before starting to write the manuscript?

No, but the P&P encourages KPMP investigators to submit concept proposals as early as possible so others interested have the opportunity to join the writing group.

Where can I find a list of the KPMP concept proposals in progress?

The Central Hub will include a list of active concept proposals in the weekly KPMP Newsletter. Anyone interested in joining a writing group should contact that group directly.

manuscripts

Do I have to submit my manuscript to P&P?

All manuscripts supported fully, or in part, by KPMP data or resources should be submitted to P&P Committee for approval. This includes any manuscripts that include authorship by a KPMP investigator and contain KPMP data (regardless of whether non-KPMP authors and or data from other sources are also included) or resources.

I am a member of the KPMP and the KPMP data in my manuscript is publicly available (pilot tissue or otherwise).
Do I have to submit it to the P&P?

Yes. The P&P will review the manuscript to ensure it credits the KPMP appropriately. The P&P also uses the submission system to track consortium output.

I am a member of the KPMP and the KPMP data in my manuscript is previously published (pilot tissue or otherwise).
Do I have to submit it to the P&P?

Yes. The P&P will review the manuscript to ensure it credits the KPMP appropriately. The P&P also uses the submission system to track consortium output.

I am a member of the KPMP and am writing a non-KPMP related manuscript that uses previously published KPMP data (pilot tissue or otherwise) as a control dataset. Do I have to submit it to the P&P?

Yes. The P&P will review the manuscript to ensure it credits the KPMP appropriately. The P&P also uses the submission system to track consortium output.

When do I have to submit my manuscript?

You should submit a nearly final draft of the manuscript two weeks (by 12:00p ET) before the P&P call you would like to be reviewed on. The P&P meets bi-weekly.

What verbiage should I use to include the KPMP as an author?

"for the Kidney Precision Medicine Project"

Abstracts

When do I have to submit an abstract?

An abstract should be submitted at least one week before the external (ie conference) submission deadline. The P&P aims to review abstracts within one week of submission, independent of their meeting schedule.

Presentations

When do I have to submit a presentation?

The P&P does not require consortium members to submit presentations. The P&P requests that consortium members submit invited talks at national meetings (talk title, meeting details, and optional presentation slides) to the P&P for archival purposes only. These submissions will not undergo review.

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