Available data in KPMP

AKI (n=46) / CKD (n=141)
Associated protocol:
Experimental strategy
Clinical data
Sex, Age  (range), Race, KDIGO Stage, Baseline eGFR (range), Proteinuria (range), A1c  (range), Albuminuria (range), Diabetes History, Hypertension History, RAAS  Blockade Status
De-identified clinical dataset (data dictionary)
Pathology
Light microscopy
Openly available in Atlas Repository
Electron microscopy
Available with DUA request
Immunofluorescence
Available with DUA request
Molecular
Transcriptomics
Single-nucleus RNA-seq
Open access:
Single-cell RNA-seq
Open access:
Regional  RNA-seq
Open access:
Bulk total/mRNA
Open access:
Spatial transcriptomics
Open access:
Proteomics
Regional proteomics
Open access:
Data not yet posted
Data not yet posted
Metabolomics
Spatial metabolomics
Openly available in METASPACE
Spatial lipidomics
Openly available in METASPACE
Spatial N-glycomics
Openly available in METASPACE
Imaging
3D imaging & cytometry
CODEX

Ancillary study data

This ancillary study includes participants enrolled outside of the KPMP protocol(s)
HEALTHY REFERENCE (n=109)
KPMP HRT sites
KPMP Pilot 1 nephrectomies
Non-KPMP procured tissue
Living kidney donors
Kidney stone donors
Associated protocol:
Available upon request
Available upon request
Not available
Not available
KPMP HRT sites
KPMP Pilot 1 nephrectomies
Non-KPMP procured tissue
Experimental strategy
Living kidney donors
Kidney stone donors
Clinical data
Not available
Not available
HRT data dictionary not yet available
HRT data dictionary not yet available
Not available
Not available
Parameters not yet established
Parameters not yet established
Sex, Age (range)
Sex, Age (range)
All other variables from codebook
All other variables from codebook
Not available
Not available
KPMP HRT sites
KPMP Pilot 1 nephrectomies
Non-KPMP procured tissue
Experimental strategy
Living kidney donors
Kidney stone donors
Pathology
Light microscopy
Data not yet generated
Data not yet generated
Openly available in Atlas Repository
Not available
Electron microscopy
Data not yet generated
Data not yet generated
Not available
Not available
Immunofluorescence
Data not yet generated
Data not yet generated
Not available
Not available
KPMP HRT sites
KPMP Pilot 1 nephrectomies
Non-KPMP procured tissue
Experimental strategy
Living kidney donors
Kidney stone donors
Molecular
Transcriptomics
Single-nucleus RNA-seq
Open access:
Data not yet generated
Data not yet generated
Data not yet generated
Data not yet generated
Single-cell RNA-seq
Open access:
Data not yet generated
Data not yet generated
Data not yet generated
Data not yet generated
Regional  RNA-seq
Open access:
Data not yet generated
Data not yet generated
Not available
Data not yet generated
Data not yet generated
Bulk total/mRNA
Open access:
Data not yet generated
Data not yet generated
Not available
Not available
Data not yet generated
Data not yet generated
Not available
Not available
Spatial transcriptomics
Open access:
Data not yet generated
Data not yet generated
Not available
Not available
Data not yet generated
Data not yet generated
Not available
Not available
Proteomics
Regional proteomics
Open access:
Data not yet generated
Data not yet generated
Data not yet posted; will be spectral count data and experiment metadata
Not available
Data not yet generated
Data not yet generated
Data not yet posted; will be .RAW files
Not available
Metabolomics
Spatial metabolomics
Data not yet generated
Data not yet generated
Not available
Not available
Spatial lipidomics
Data not yet generated
Data not yet generated
Not available
Not available
Spatial N-glycomics
Data not yet generated
Data not yet generated
Not available
Not available
Imaging
3D imaging & cytometry
N/A
Data not yet generated
Data not yet generated
Data not yet posted
Not available
CODEX
N/A
Data not yet generated
Data not yet generated
Data not yet posted
Not available
COVID-19 (n=90)
Associated protocol:
CODEBOOK(s):
Experimental strategy
Clinical data
Not available
Available with DUA request
Blood & urine
Not available
Available with an approved ancillary study
Retinal imaging substudy (n=22)
Associated protocol:
CODEBOOK(s):
Experimental strategy
Clinical data
Not available
Available with limited DUA request
Retinal images
Not available
Available with PHI DUA request
fMRI substudy (n=13)
Associated protocol:
CODEBOOK(s):
Experimental strategy
Clinical data
Not available
Available with limited DUA request
Retinal images
Not available
Available with limited DUA request
Kidney physiology substudy (n=7)
Associated protocol:
CODEBOOK(s):
Experimental strategy
Clinical data
Not available
Available with limited DUA request
KPMP biomarkers (n=18 Healthy Reference) (n=119 AKI or CKD)
Associated protocol:
CODEBOOK(s):
Experimental strategy
Plasma & urine
MSD plasma, MSD urine
N/A